STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3734PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: sme:SMc03116 putative alcohol dehydrogenase protein. (539 aa)    
Predicted Functional Partners:
Meso_3735
Hypothetical protein.
       0.773
Meso_3736
PFAM: aminotransferase, class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II.
       0.773
Meso_2440
WD-40 repeat-containing protein; PFAM: WD-40 repeat cytochrome c, class I; KEGG: bja:bll5485 hypothetical protein.
  
 0.628
Meso_3737
PFAM: extracellular solute-binding protein, family 5; KEGG: reu:Reut_A3006 extracellular solute-binding protein, family 5.
  
    0.595
Meso_3738
KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.586
Meso_3739
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3659 oligopeptide ABC transporter permease.
       0.586
Meso_3740
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7564 putative oligopeptide ABC transporter integral membrane protein.
       0.586
Meso_2841
WD-40 repeat-containing protein; KEGG: mlo:mll5154 hypothetical protein.
    
 0.564
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
    
 0.532
Meso_2801
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ret:RHE_CH03608 probable O-linked GlcNAc transferase protein.
    
 0.529
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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