Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3756PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein. (296 aa)    
Predicted Functional Partners:
Meso_3757
Dihydroxyacid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpa:RPA2155 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
     0.801
Meso_1049
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
 
     0.725
Meso_1079
PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
 
     0.704
Meso_1063
Demethylmenaquinone methyltransferase-like protein; KEGG: mka:MK1449 demethylmenaquinone methyltransferase.
 
   
 0.609
Meso_3297
PFAM: Dimethylmenaquinone methyltransferase; KEGG: lpn:lpg2683 DlpA protein.
 
   
 0.608
Meso_3758
PFAM: dihydrodipicolinate synthetase; KEGG: jan:Jann_3748 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
 0.485
Meso_3755
PFAM: flavin reductase-like, FMN-binding; KEGG: reu:Reut_A1544 flavin reductase-like, FMN-binding.
       0.479
Meso_3537
PFAM: Cupin 2, conserved barrel; KEGG: bja:bll6423 hypothetical protein.
  
 
   0.467
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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