Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_3767PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: rpb:RPB_1140 transcriptional regulator, AraC family. (371 aa)    
Predicted Functional Partners:
Meso_0577
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family.
  
 
 0.739
Meso_0574
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein.
  
 
 0.731
Meso_2413
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein.
  
 
 0.660
Meso_0592
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: atc:AGR_L_1105 sarcosine oxidase, subunit delta.
 
    0.581
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
 
     0.570
Meso_3766
PFAM: aldehyde dehydrogenase; KEGG: pub:SAR11_0766 succinate-semialdehyde dehydrogenase (NAD(P)).
       0.540
Meso_2944
PFAM: ThiJ/PfpI; KEGG: bbr:BB2338 probable transcriptional regulator.
  
     0.533
Meso_0591
TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_1106 sarcosine oxidase beta subunit.
  
     0.510
Meso_2466
PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0248 probable transcriptional regulator.
 
 
 0.472
Meso_2572
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: reu:Reut_B5021 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation.
 
 
 0.439
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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