Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3783TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: atc:AGR_L_828 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Meso_3784
TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mll4918 ribitol kinase.
       0.787
Meso_3782
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cme:CMR373C 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase Pfam: adh_short PROSITE: ADH_SHORT.
   
   0.781
Meso_3780
PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: mlo:mll4923 unknown protein.
     
 0.746
Meso_3781
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO0363 sorbitol dehydrogenase.
   
   0.742
Meso_3778
Mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_839 maltose transport inner membrane protein.
 
  
 0.689
Meso_3779
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll4924 sorbitol/mannitol transport inner membrane protein.
 
   
 0.683
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
    
  0.679
Meso_3777
PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein.
 
   
 0.536
Meso_3776
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding region; KEGG: mlo:mll4931 transcriptional regulator, operon regulator; SmoC.
 
     0.531
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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