Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3786PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sme:SMb21550 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Meso_3785
PFAM: Rhodanese-like; KEGG: sme:SMb21549 putative exported sulfurtransferase, rhodanese protein.
 
  
 0.768
cysN
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.695
Meso_3787
KEGG: sme:SMa2299 hypothetical protein.
 
     0.628
Meso_2429
PFAM: SirA-like; KEGG: nwi:Nwi_0975 SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.480
Meso_3059
PFAM: SirA-like; KEGG: mlo:msr3579 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.480
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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