Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3787KEGG: sme:SMa2299 hypothetical protein. (202 aa)    
Predicted Functional Partners:
Meso_3786
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sme:SMb21550 hypothetical protein.
 
     0.628
Meso_2056
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.621
Meso_0646
PFAM: glycosyl transferase, family 2.
  
     0.562
Meso_3488
Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: mlo:mlr4548 transcriptional regulator.
  
     0.531
Meso_3134
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: hma:pNG7365 serine protease.
  
     0.505
Meso_3785
PFAM: Rhodanese-like; KEGG: sme:SMb21549 putative exported sulfurtransferase, rhodanese protein.
 
     0.438
Meso_3584
Hypothetical protein; KEGG: mta:Moth_2408 methicillin resistance protein.
  
     0.416
Meso_0016
KEGG: bmb:BruAb2_0443 hypothetical protein.
  
     0.411
Meso_3130
PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator.
  
     0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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