Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3795KEGG: pfo:Pfl_5697 hypothetical protein. (740 aa)    
Predicted Functional Partners:
Meso_3794
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region.
 
     0.949
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.554
Meso_3512
KEGG: sme:SMb20339 hypothetical protein.
  
 0.472
Meso_2200
PFAM: phosphoesterase, PA-phosphatase related; KEGG: rsp:RSP_0119 PA-phosphatase related phosphoesterase.
  
 
 0.469
Meso_0550
KEGG: bja:blr0072 hypothetical protein.
  
     0.410
Meso_2232
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: sme:SMa1155 cation transport P-type ATPase, hypothetical.
   
 
 0.409
Meso_0513
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region.
 
     0.408
Meso_2882
PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMb20650 putative long-chain fatty-acid-CoA ligase protein.
  
  
 0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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