Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3815KEGG: nwi:Nwi_2122 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Meso_3814
PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC.
     0.943
Meso_3816
KEGG: rme:Rmet_6247 hypothetical protein.
       0.776
Meso_0539
PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC.
     0.763
Meso_3793
PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_0255 antirestriction protein.
     0.607
Meso_3856
KEGG: nar:Saro_0313 hypothetical protein.
  
     0.594
Meso_0525
KEGG: mlo:mlr9734 hypothetical protein.
 
     0.558
Meso_0528
KEGG: rru:Rru_A0163 transcriptional regulator, XRE family.
 
     0.536
Meso_0504
KEGG: nar:Saro_0313 hypothetical protein.
  
     0.528
Meso_2319
KEGG: nar:Saro_0313 hypothetical protein.
  
     0.502
Meso_3813
Hypothetical protein.
       0.491
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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