Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3829KEGG: nwi:Nwi_2129 hypothetical protein. (346 aa)    
Predicted Functional Partners:
Meso_3828
KEGG: nwi:Nwi_2128 probably methylase/helicase.
 
     0.943
Meso_3830
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.863
Meso_3827
KEGG: nwi:Nwi_2126 hypothetical protein.
 
     0.844
Meso_3819
KEGG: nwi:Nwi_2123 hypothetical protein.
 
     0.805
Meso_0533
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.781
Meso_0538
TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: bja:blr1932 hypothetical protein.
 
     0.781
Meso_2344
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.781
Meso_2346
KEGG: bja:bll0065 putative DNA-binding protein.
 
     0.778
Meso_0535
KEGG: mlo:mlr9704 probably methylase/helicase.
 
     0.767
Meso_2347
PFAM: ParB-like nuclease; KEGG: bja:bll0065 putative DNA-binding protein.
 
     0.760
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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