Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3836KEGG: nwi:Nwi_0844 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Meso_3838
KEGG: mlo:mlr9734 hypothetical protein.
 
   
 0.882
Meso_3843
KEGG: bja:bll0048 hypothetical protein.
 
     0.818
Meso_3841
Putative transcriptional regulator; KEGG: mlo:msr9739 hypothetical protein.
 
     0.813
Meso_3835
KEGG: ret:RHE_CH00634 hypothetical protein.
 
     0.808
Meso_0525
KEGG: mlo:mlr9734 hypothetical protein.
 
   
 0.768
Meso_2334
KEGG: bja:bll0048 hypothetical protein.
 
     0.761
Meso_3845
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: nwi:Nwi_0849 conjugal transfer protein precursor.
 
     0.761
Meso_0520
KEGG: bja:bll0048 hypothetical protein.
 
     0.756
Meso_0524
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: mlo:msr9739 hypothetical protein.
 
     0.756
Meso_2338
KEGG: mlo:msr9739 hypothetical protein.
 
     0.753
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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