Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3840KEGG: eba:ebA101 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Meso_3839
PFAM: protein of unknown function DUF891; KEGG: xfa:XF1678 hypothetical protein.
 
  
 0.966
Meso_3837
KEGG: mlo:msr9733 hypothetical protein.
       0.732
Meso_3838
KEGG: mlo:mlr9734 hypothetical protein.
       0.732
Meso_3836
KEGG: nwi:Nwi_0844 hypothetical protein.
       0.488
Meso_2827
PFAM: SpoVT/AbrB-like; KEGG: xac:XACb0060 virulence plasmid protein.
  
     0.452
Meso_0885
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix motif; KEGG: bja:bll3011 virulence-associated protein I.
 
     0.420
Meso_3841
Putative transcriptional regulator; KEGG: mlo:msr9739 hypothetical protein.
       0.418
Meso_3842
KEGG: bja:bll0051 replication protein A.
       0.418
Meso_3843
KEGG: bja:bll0048 hypothetical protein.
       0.418
Meso_3844
PFAM: DNA methylase N-4/N-6; KEGG: nwi:Nwi_0847 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.
       0.418
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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