Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3846KEGG: mlo:mlr9743 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Meso_3843
KEGG: bja:bll0048 hypothetical protein.
 
     0.893
Meso_3845
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: nwi:Nwi_0849 conjugal transfer protein precursor.
 
     0.889
Meso_3841
Putative transcriptional regulator; KEGG: mlo:msr9739 hypothetical protein.
 
     0.849
Meso_3842
KEGG: bja:bll0051 replication protein A.
 
     0.842
Meso_3847
PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase.
 
     0.826
Meso_2333
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: bja:bll0047 conjugal transfer protein precursor.
 
     0.761
Meso_3848
KEGG: rru:Rru_A0816 hypothetical protein.
 
     0.740
Meso_2334
KEGG: bja:bll0048 hypothetical protein.
 
     0.732
Meso_0519
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: bja:bll0047 conjugal transfer protein precursor.
 
     0.731
Meso_3838
KEGG: mlo:mlr9734 hypothetical protein.
 
     0.730
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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