Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Meso_3861KEGG: rso:RSc2574 hypothetical/unknown protein. (91 aa)    
Predicted Functional Partners:
Meso_3858
PFAM: Conjugal transfer protein; KEGG: nwi:Nwi_2093 conjugal transfer protein.
 
     0.781
Meso_3853
KEGG: rru:Rru_A0806 conjugal transfer protein.
 
     0.764
Meso_3852
PFAM: Conjugal transfer protein TrbC; KEGG: nar:Saro_0317 conjugal transfer protein TrbC.
 
     0.761
Meso_3854
ATPase; SMART: ATPase; KEGG: bja:bll8285 probable conjugal transfer protein.
 
     0.739
Meso_3857
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mll9606 conjugal transfer protein trbL.
 
     0.731
Meso_3859
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
 
     0.727
Meso_3860
PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI.
 
     0.709
Meso_3855
KEGG: mlo:mll9607 conjugal transfer protein trbJ.
 
     0.662
Meso_3856
KEGG: nar:Saro_0313 hypothetical protein.
       0.642
Meso_3849
PFAM: TRAG protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein.
 
   
 0.628
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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