Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3895PFAM: protein of unknown function DUF305; KEGG: sme:SMc00921 hypothetical signal peptide protein. (134 aa)    
Predicted Functional Partners:
Meso_3894
PFAM: Heavy metal transport/detoxification protein; KEGG: reu:Reut_A3377 heavy metal transport/detoxification protein.
 
    0.820
Meso_3896
PFAM: protein of unknown function DUF305; KEGG: ret:RHE_CH03397 hypothetical protein.
 
     0.673
Meso_3892
Transcriptional regulator, MerR family; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family.
 
     0.606
Meso_3893
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper ion binding protein copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: xcv:XCV2336 copper-translocating P-type ATPase.
 
    0.582
Meso_3891
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF411; KEGG: reu:Reut_A2485 protein of unknown function DUF411.
       0.453
Meso_0536
KEGG: ecc:c0271 hypothetical protein.
  
     0.428
Meso_3822
PFAM: Antirestriction protein; KEGG: sme:SMa0900 possible anti-restriction protein.
  
     0.402
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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