Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3902PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (246 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.927
Meso_2579
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase phosphopantetheine-binding; KEGG: ava:Ava_4833 amino acid adenylation.
 
 
  0.917
Meso_3903
PFAM: aldo/keto reductase; KEGG: ecc:c0413 putative aldo/keto reductase.
 
  
 0.751
Meso_3904
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldo/keto reductase; KEGG: ade:Adeh_3215 aldo/keto reductase.
 
  
 0.738
Meso_3901
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH00289 probable short-chain dehydrogenase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
0.722
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 
  0.720
Meso_2950
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_4004 short-chain dehydrogenase/reductase SDR.
 
 
  0.712
Meso_3900
PFAM: aldo/keto reductase; KEGG: ade:Adeh_3218 aldo/keto reductase.
  
  
 0.637
Meso_3905
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:blr5548 transcriptional regulatory protein.
 
   
 0.583
Meso_2115
KEGG: ath:At1g64980 expressed protein.
  
    0.513
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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