Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3908KEGG: nmu:Nmul_A2484 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Meso_3907
KEGG: mba:Mbar_A0780 hypothetical protein.
       0.780
Meso_3906
KEGG: bja:blr4804 probable phospholipid N-methyltransferase.
       0.574
Meso_3909
PFAM: Cupin 2, conserved barrel; KEGG: bmb:BruAb2_0756 hypothetical protein.
  
    0.519
Meso_2243
TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: rpa:RPA4145 dissimilatory nitrite reductase.
   
 
 0.401
Meso_3882
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: lpn:lpg0265 multicopper oxidase.
   
 
 0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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