Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3912KEGG: ypm:YP1844 hypothetical protein. (377 aa)    
Predicted Functional Partners:
Meso_3911
KEGG: ade:Adeh_3213 hypothetical protein.
 
 
 0.936
Meso_3898
KEGG: ade:Adeh_3220 hypothetical protein.
 
   
 0.682
Meso_3910
PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll4600 4-carboxymuconolactone decarboxylase, putative.
 
   
 0.605
Meso_3909
PFAM: Cupin 2, conserved barrel; KEGG: bmb:BruAb2_0756 hypothetical protein.
 
    0.603
Meso_3899
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: mba:Mbar_A0781 hypothetical protein.
 
   
 0.601
Meso_0572
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: jan:Jann_1319 hypothetical protein.
  
   
 0.575
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
  
 0.547
Meso_1629
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.489
Meso_3398
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component Transketolase, central region; KEGG: mlo:mll4301 alpha-ketoglutarate dehydrogenase.
    
  0.448
Meso_2098
Transcriptional regulator; PFAM: Cupin 2, conserved barrel; KEGG: bme:BMEII0800 transcriptional regulator.
 
    0.435
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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