Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_3923Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: atc:AGR_C_630 hypothetical protein. (140 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.720
Meso_3924
PFAM: S-adenosylmethionine synthetase; KEGG: atc:AGR_C_632 S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.
     
 0.703
Meso_2181
TIGRFAM: conserved hypothetical membrane protein; KEGG: mlo:mlr2734 hypothetical protein.
  
     0.684
Meso_0423
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bmb:BruAb2_0194 hydrolase, haloacid dehalogenase-like family.
  
     0.682
Meso_2182
PFAM: protein of unknown function DUF1355; KEGG: mlo:mlr2735 hypothetical protein.
  
     0.668
Meso_2145
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mlr2667 probable two-component sensor.
  
     0.659
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.655
Meso_3317
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: mlo:mlr4475 putative DNA polymerase III, delta subunit.
  
     0.622
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
  
     0.619
Meso_3081
PFAM: Methyltransferase type 11; KEGG: mlo:mll3545 hypothetical protein.
  
     0.616
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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