Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3949PFAM: protein of unknown function DUF1498; KEGG: mlo:mlr8329 hypothetical protein. (234 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase.
 
  
  0.928
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; KEGG: mlo:mlr5036 xylose isomerase; Belongs to the xylose isomerase family.
     
  0.900
Meso_3948
Transcriptional regulator, AsnC family; PFAM: regulatory proteins, AsnC/Lrp; KEGG: ret:RHE_CH04051 putative transcriptional regulator protein.
       0.581
Meso_3950
KEGG: mlo:mlr4942 hypothetical protein.
       0.497
Meso_0454
KEGG: mlo:msl4978 hypothetical protein.
  
     0.450
Meso_0455
5-deoxyglucuronate isomerase; PFAM: Myo-inositol catabolism IolB region; KEGG: atc:AGR_L_719 putative myo-inositol catabolism protein.
  
     0.434
Meso_1627
PFAM: lipolytic enzyme, G-D-S-L; KEGG: sme:SMc01033 probable arylesterase protein.
  
     0.403
fur-2
Manganese uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bmb:BruAb1_1641 hypothetical ferric uptake regulation protein; Belongs to the Fur family.
       0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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