Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3954PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mll5605 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Meso_3999
KEGG: sme:SMc04109 putative response regulator protein.
 
  
 0.805
Meso_4096
KEGG: mlo:mll5591 hypothetical protein.
 
 
 0.803
Meso_3998
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD.
 
   
 0.801
Meso_0608
PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein.
 
  
 0.800
Meso_0606
KEGG: sme:SMa1580 hypothetical protein.
 
 
 0.791
Meso_4097
PFAM: TadE-like; KEGG: bja:blr3942 hypothetical protein.
 
  
 0.786
Meso_3997
PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family.
 
 
 0.782
Meso_4094
PFAM: peptidase A24A, prepilin type IV; KEGG: mlo:mlr5594 prepilin peptidase CpaA.
 
   
 0.778
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
  
     0.766
Meso_3996
KEGG: mlo:mlr5595 pilus assembly protein cpaB.
 
  
 0.759
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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