Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3963Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mlo:mll6778 arginase; Belongs to the arginase family. (309 aa)    
Predicted Functional Partners:
Meso_3962
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mll6776 ornithine cyclodeaminase.
 
  
 0.994
Meso_2027
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll1584 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.919
Meso_2715
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll2974 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.919
Meso_1837
BFD-like (2Fe-2S)-binding region; PFAM: HI0933-like protein FAD dependent oxidoreductase BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0992 probable pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.916
Meso_0008
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.912
Meso_2240
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.912
argJ
N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.912
Meso_1839
PFAM: FAD dependent oxidoreductase; KEGG: bbr:BB0994 probable FAD dependent oxidoreductase.
  
 
 0.911
ureC
Urease. Metallo peptidase. MEROPS family M38; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase Urease alpha-subunit-like; KEGG: mlo:mll4940 urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
 0.910
ureA
TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; KEGG: sme:SMc01941 urease gamma subunit protein; Belongs to the urease gamma subunit family.
    
  0.905
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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