Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3965PFAM: Malate/L-lactate dehydrogenase; KEGG: ppu:PP2835 oxidoreductase, Ldh family; Belongs to the LDH2/MDH2 oxidoreductase family. (354 aa)    
Predicted Functional Partners:
Meso_3967
KEGG: bja:bll3050 hypothetical protein.
 
     0.823
Meso_3966
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll3049 hypothetical protein.
       0.749
Meso_3968
PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein.
       0.497
Meso_3970
PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD).
 
   
 0.462
Meso_3971
PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7953 hypothetical protein; Belongs to the DapA family.
 
   
 0.443
Meso_3969
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfl:PFL_1360 transcriptional regulator, GntR family.
 
     0.418
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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