Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3967KEGG: bja:bll3050 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Meso_3966
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll3049 hypothetical protein.
 
  
 0.916
Meso_0414
PFAM: protein of unknown function DUF1468; KEGG: reu:Reut_B3643 protein of unknown function DUF1468.
     
  0.900
Meso_1066
Hypothetical protein.
     
  0.900
Meso_1845
Hypothetical protein.
     
  0.900
Meso_2510
KEGG: sco:SCO1139 integral membrane protein.
     
  0.900
Meso_3048
Hypothetical protein.
     
  0.900
Meso_3289
PFAM: protein of unknown function DUF1468; KEGG: ade:Adeh_2247 hypothetical protein.
     
  0.900
Meso_3298
PFAM: protein of unknown function DUF1468; KEGG: reu:Reut_B3643 protein of unknown function DUF1468.
     
  0.900
Meso_3314
KEGG: sme:SMb20725 putative tricarboxylic transport membrane protein.
     
  0.900
Meso_3968
PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein.
 
    0.847
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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