Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3970PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD). (509 aa)    
Predicted Functional Partners:
Meso_3969
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfl:PFL_1360 transcriptional regulator, GntR family.
 
   
 0.815
Meso_3971
PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7953 hypothetical protein; Belongs to the DapA family.
 
   
 0.648
Meso_0846
PFAM: KDPG and KHG aldolase; KEGG: sme:SMc00882 putative KHG/KDPG aldolase protein.
 
  
 0.627
Meso_3550
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mll7149 mandelate racemase.
 
  
 0.548
Meso_3972
PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: bme:BMEII0871 shikimate 5-dehydrogenase.
       0.543
Meso_1074
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: bja:blr6118 hypothetical protein.
 
  
 0.541
Meso_1071
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
 
  
 0.517
Meso_3968
PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein.
 
     0.511
Meso_3620
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: pfo:Pfl_2774 mandelate racemase/muconate lactonizing enzyme.
 
  
 0.507
Meso_1946
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_3340 hypothetical protein.
 
  
 0.493
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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