Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3978Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; SMART: Ionotropic glutamate receptor; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein; TC 3.A.1.3.-. (260 aa)    
Predicted Functional Partners:
Meso_3977
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_980GM putative ABC transporter permease; TC 3.A.1.3.-.
 0.977
Meso_3976
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 0.956
Meso_3975
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_381 glutamine ABC transporter, ATP-binding protein (glnQ); TC 3.A.1.3.-.
 
 0.928
Meso_1563
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 0.898
Meso_1115
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.
 
 0.895
Meso_1564
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 
 0.886
Meso_0040
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa2197 putative ABC transporter, permease; TC 3.A.1.3.-.
 
 0.874
Meso_1114
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
 
 
 0.874
Meso_3148
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; TC 3.A.1.3.-.
 
 0.870
Meso_0039
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.
 
 0.863
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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