Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3980KEGG: mlo:mlr3146 hypothetical protein. (106 aa)    
Predicted Functional Partners:
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.713
Meso_2209
KEGG: mlo:mll2809 hypothetical protein.
  
     0.686
Meso_0881
KEGG: mlo:mll7655 hypothetical protein.
  
     0.677
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.662
Meso_1286
KEGG: mlo:mll0081 hypothetical protein.
  
     0.626
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
  
     0.617
Meso_3030
KEGG: ret:RHE_CH03789 hypothetical protein.
  
     0.617
Meso_0882
PFAM: protein of unknown function DUF1214; KEGG: mlo:mll7656 hypothetical protein.
  
     0.610
Meso_1747
KEGG: bmb:BruAb1_1390 hypothetical protein.
  
     0.609
Meso_0761
KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical.
  
     0.593
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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