node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Meso_3606 | Meso_3984 | Meso_3606 | Meso_3984 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | 0.858 |
Meso_3606 | Meso_4043 | Meso_3606 | Meso_4043 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase. | 0.924 |
Meso_3606 | rnr | Meso_3606 | Meso_1353 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.592 |
Meso_3606 | rph | Meso_3606 | Meso_4016 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.806 |
Meso_3606 | rplD | Meso_3606 | Meso_1677 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.984 |
Meso_3606 | rplW | Meso_3606 | Meso_1676 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.969 |
Meso_3606 | rpsD | Meso_3606 | Meso_1270 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.992 |
Meso_3606 | rpsG | Meso_3606 | Meso_1682 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.985 |
Meso_3606 | rpsK | Meso_3606 | Meso_1655 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.992 |
Meso_3983 | Meso_3984 | Meso_3983 | Meso_3984 | PFAM: peptidase M20 peptidase dimerisation; KEGG: bmb:BruAb1_0118 hypothetical protein. | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | 0.801 |
Meso_3984 | Meso_3606 | Meso_3984 | Meso_3606 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.858 |
Meso_3984 | Meso_3983 | Meso_3984 | Meso_3983 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | PFAM: peptidase M20 peptidase dimerisation; KEGG: bmb:BruAb1_0118 hypothetical protein. | 0.801 |
Meso_3984 | Meso_4043 | Meso_3984 | Meso_4043 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase. | 0.805 |
Meso_3984 | rnr | Meso_3984 | Meso_1353 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.771 |
Meso_3984 | rph | Meso_3984 | Meso_4016 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.872 |
Meso_3984 | rplD | Meso_3984 | Meso_1677 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.778 |
Meso_3984 | rplW | Meso_3984 | Meso_1676 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.738 |
Meso_3984 | rpsD | Meso_3984 | Meso_1270 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.832 |
Meso_3984 | rpsG | Meso_3984 | Meso_1682 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.696 |
Meso_3984 | rpsK | Meso_3984 | Meso_1655 | PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.823 |