Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_4001PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein. (337 aa)    
Predicted Functional Partners:
Meso_3999
KEGG: sme:SMc04109 putative response regulator protein.
 
  
 0.986
Meso_4002
PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein.
 
  
 0.985
Meso_4000
PFAM: type II secretion system protein E; KEGG: mlo:mlr5602 secretory protein kinase, cpaF.
 
  
 0.974
Meso_0608
PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein.
 
  
 0.973
Meso_3996
KEGG: mlo:mlr5595 pilus assembly protein cpaB.
 
  
 0.973
Meso_3997
PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.958
Meso_0602
PFAM: type II secretion system protein; KEGG: sme:SMa1562 hypothetical protein.
 
  
 0.938
Meso_0609
KEGG: sme:SMa1576 probable CpaB2 pilus assembly protein.
 
  
 0.927
Meso_0604
PFAM: type II secretion system protein E; KEGG: sme:SMa1568 probable CpaF2 pilus assembly protein.
 
  
 0.894
Meso_3998
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD.
 
   
 0.887
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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