Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_4003KEGG: ret:RHE_CH02709 zinc uptake transcriptional regulator protein, Fur family; Belongs to the Fur family. (144 aa)    
Predicted Functional Partners:
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
  
 0.968
Meso_4004
PFAM: ABC-3; KEGG: ret:RHE_CH02710 zinc uptake ABC transporter, permease protein.
 
  
 0.909
Meso_4006
PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH02712 zinc uptake ABC transporter, substrate-binding protein.
 
  
 0.820
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.680
Meso_4088
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: sme:SMb20964 putative anti-oxidant protein, AhpCTSA family.
  
  
 0.617
Meso_1166
PFAM: CoA-binding; KEGG: mlo:mlr8464 hypothetical protein.
  
    0.547
Meso_2852
PFAM: ABC transporter related; SMART: ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein.
  
  
 0.504
Meso_4007
KEGG: sme:SMb20032 hypothetical protein.
 
  
 0.494
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 0.458
Meso_2744
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain.
     
 0.455
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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