Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_4022PFAM: protein of unknown function DUF540; KEGG: mlo:mlr5338 similar to transport protein. (243 aa)    
Predicted Functional Partners:
Meso_4021
PfkB; PFAM: PfkB; KEGG: mlo:mll5335 hypothetical protein.
 
     0.640
Meso_2014
KEGG: mlo:mll1563 hypothetical protein.
  
     0.598
Meso_1380
KEGG: mlo:mll0656 hypothetical protein.
  
     0.553
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
  
     0.552
Meso_1631
PFAM: Septum formation initiator; KEGG: mlo:mlr0382 hypothetical protein.
  
     0.522
Meso_1142
PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein.
  
    0.516
Meso_0426
KEGG: mlo:mlr8251 hypothetical protein.
  
     0.513
Meso_1346
KEGG: mlo:mlr0862 hypothetical protein.
  
     0.494
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.493
Meso_2715
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll2974 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
     0.484
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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