Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_4036UspA; PFAM: UspA; KEGG: mlo:mll5316 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Meso_0027
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll5621 hypothetical protein.
 
     0.805
Meso_0026
PFAM: protein of unknown function DUF81; KEGG: mlo:mll5620 hypothetical protein.
 
     0.802
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.680
Meso_4037
PFAM: nitrogen-fixing NifU-like; KEGG: mlo:mll5315 thioredoxin-like protein.
     
 0.655
Meso_2149
PFAM: protein of unknown function DUF526; KEGG: mlo:mll2675 hypothetical protein.
  
     0.643
Meso_0016
KEGG: bmb:BruAb2_0443 hypothetical protein.
  
     0.589
Meso_3023
KEGG: mlo:mlr3476 hypothetical protein.
  
     0.540
Meso_3072
KEGG: mlo:mll3560 hypothetical protein.
  
     0.524
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.505
Meso_0351
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: atc:AGR_C_680 hypothetical protein.
  
     0.447
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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