Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_4054KEGG: cbu:CBU_0902 hypothetical protein. (1199 aa)    
Predicted Functional Partners:
Meso_3523
PFAM: Allergen V5/Tpx-1 related; KEGG: tel:tll1411 hypothetical protein.
  
 
  0.700
Meso_0912
PFAM: lipolytic enzyme, G-D-S-L; KEGG: cac:CAC0537 acetylxylan esterase, acyl-CoA esterase or GDSL lipase family, strong similarity to C-terminal region of endoglucanase E precursor.
   
 
 0.415
Meso_1627
PFAM: lipolytic enzyme, G-D-S-L; KEGG: sme:SMc01033 probable arylesterase protein.
   
 
 0.415
Meso_3350
PFAM: lipolytic enzyme, G-D-S-L; KEGG: mlo:mlr4347 acyl-CoA thioesterase.
   
 
 0.415
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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