Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_4058PFAM: histidine triad (HIT) protein; KEGG: mlo:mll5502 hypothetical protein. (139 aa)    
Predicted Functional Partners:
slyX
SlyX; PFAM: SlyX; KEGG: mlo:msl3152 similar to slyX protein - Escherichia coli (host factor for lysis of phiX174 infection); Belongs to the SlyX family.
  
    0.558
Meso_0090
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; KEGG: mlo:mll5691 two-component sensor histidine kinase.
 
     0.545
Meso_3422
PFAM: NAD-glutamate dehydrogenase; KEGG: mlo:mll4104 hypothetical protein.
  
    0.495
dnaX
DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.475
Meso_4056
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.469
Meso_0161
PFAM: glutamine synthetase, catalytic region; KEGG: bms:BRA0768 glutamine synthetase family protein.
  
   0.466
Meso_1544
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein.
  
   0.466
Meso_1870
PFAM: glutamine synthetase, catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase.
  
   0.466
Meso_3415
PFAM: nuclease (SNase-like); KEGG: rpa:RPA0032 possible staphylococcal nuclease homologues.
 
    0.408
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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