Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_4067TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsp:RSP_1613 TRAP-T family transporter, DctP subunit. (318 aa)    
Predicted Functional Partners:
Meso_4068
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1614 TRAP-T family transporter with fused DctQ/DctM subunits.
 
 
  0.991
Meso_4069
KEGG: rsp:RSP_1615 hypothetical protein.
 
    0.902
Meso_1091
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmu:PM1580 hypothetical A. fulgidus.
 
    0.834
Meso_3624
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_1727 TRAP transporter, 4TM/12TM fusion protein.
 
    0.834
Meso_0178
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPO2186 TRAP transporter, 4TM/12TM fusion protein.
 
    0.828
Meso_4065
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pfo:Pfl_4892 cytochrome bd ubiquinol oxidase, subunit II.
       0.428
Meso_4066
PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: eba:ebA4639 cyanide insensitive terminal oxidase.
       0.428
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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