Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_4084PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5494 peptide ABC transporter, periplasmic peptide-binding protein. (622 aa)    
Predicted Functional Partners:
Meso_4083
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5493 ABC transporter, solute-binding protein.
 
  
 
0.980
Meso_4082
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5491 peptide ABC transporter, permease protein.
 
 
 0.954
Meso_4081
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5492 peptide ABC transporter, permease protein.
 
 
 0.940
Meso_4080
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mll5490 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.908
Meso_1699
PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr0514 probable binding protein component of ABC transporter.
  
  
 
0.850
Meso_1115
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.
   
 
 0.829
Meso_2851
PFAM: ABC-3; KEGG: jan:Jann_2082 ABC-3.
     
 0.829
Meso_3668
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3197 ABC transporter ATP-binding protein (in RpoN upstream).
     
 0.826
Meso_1592
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: mlo:mll0708 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
     
  0.824
Meso_1593
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0706 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
     
  0.824
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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