rpsT protein (Chelativorans sp. BNC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpsT

SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (88 aa)

Predicted Functional Partners:

rpsO

0.993

rpsI

0.992

rpsP

0.992

rpsJ

0.991

rpsR

0.991

rpsB

0.990

rpsQ

0.987

rpsF

0.987

rpsL

0.985

rpsD

0.984

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsD	Meso_1381	Meso_1270	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.996
rpsB	rpsF	Meso_1381	Meso_1916	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.996
rpsB	rpsI	Meso_1381	Meso_1163	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsB	rpsJ	Meso_1381	Meso_1679	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.995
rpsB	rpsL	Meso_1381	Meso_1683	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.997
rpsB	rpsO	Meso_1381	Meso_3934	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.996
rpsB	rpsP	Meso_1381	Meso_3339	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S16; KEGG: bmb:BruAb1_1803 RpsP, ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.994
rpsB	rpsQ	Meso_1381	Meso_1669	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
rpsB	rpsR	Meso_1381	Meso_1917	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.997
rpsB	rpsT	Meso_1381	Meso_4102	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.990
rpsD	rpsB	Meso_1270	Meso_1381	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.996
rpsD	rpsF	Meso_1270	Meso_1916	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.993
rpsD	rpsI	Meso_1270	Meso_1163	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.996
rpsD	rpsJ	Meso_1270	Meso_1679	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rpsD	rpsL	Meso_1270	Meso_1683	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.996
rpsD	rpsO	Meso_1270	Meso_3934	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.994
rpsD	rpsP	Meso_1270	Meso_3339	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	PFAM: ribosomal protein S16; KEGG: bmb:BruAb1_1803 RpsP, ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.994
rpsD	rpsQ	Meso_1270	Meso_1669	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.996
rpsD	rpsR	Meso_1270	Meso_1917	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.993
rpsD	rpsT	Meso_1270	Meso_4102	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.984