Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppFPeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
oppC_2
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
oppD
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
0.997
gsiD_3
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.994
gsiD_2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.993
oppC_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.993
appA
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
gsiC_4
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.970
gsiC_3
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.940
gsiC_2
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.940
gsiC_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.932
Your Current Organism:
Thalassobacter stenotrophicus
NCBI taxonomy Id: 266809
Other names: CECT 5294, DSM 16310, Jannaschia cystaugens, Jannaschia cystaugens Adachi et al. 2004, LMG 22015 [[Jannaschia cystaugens]], LMG:22015 [[Jannaschia cystaugens]], NBRC 100362 [[Jannaschia cystaugens]], T. stenotrophicus, Thalassobacter oligotrophus, Thalassobacter sp. 1CONIMAR09, Thalassobacter stenotrophicus Macian et al. 2005, strain 5SM22, strain CFPB-A9 [[Jannaschia cystaugens]]
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