STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malK_2Glycerol-3-phosphate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (335 aa)    
Predicted Functional Partners:
ycjP
Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
sugA
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.991
sugB_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.951
sugB_3
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.943
KGK78764.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.941
lacF_1
Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.936
araQ_1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.933
lacF_4
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.919
lacF_2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.917
modB
Molybdate ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  0.905
Your Current Organism:
Thalassobacter stenotrophicus
NCBI taxonomy Id: 266809
Other names: CECT 5294, DSM 16310, Jannaschia cystaugens, Jannaschia cystaugens Adachi et al. 2004, LMG 22015 [[Jannaschia cystaugens]], LMG:22015 [[Jannaschia cystaugens]], NBRC 100362 [[Jannaschia cystaugens]], T. stenotrophicus, Thalassobacter oligotrophus, Thalassobacter sp. 1CONIMAR09, Thalassobacter stenotrophicus Macian et al. 2005, strain 5SM22, strain CFPB-A9 [[Jannaschia cystaugens]]
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