Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL45739.1 | SFL45754.1 | SAMN04488054_10121 | SAMN04488054_10122 | Serine protease Do. | Aldo/keto reductase. | 0.551 |
SFL45739.1 | SFL49328.1 | SAMN04488054_10121 | SAMN04488054_101220 | Serine protease Do. | Acyl-CoA dehydrogenase. | 0.572 |
SFL45739.1 | SFL56475.1 | SAMN04488054_10121 | SAMN04488054_102171 | Serine protease Do. | N-terminal half of MaoC dehydratase. | 0.512 |
SFL45739.1 | SFL72989.1 | SAMN04488054_10121 | SAMN04488054_10476 | Serine protease Do. | Trypsin-like peptidase domain-containing protein. | 0.750 |
SFL45739.1 | alaS | SAMN04488054_10121 | SAMN04488054_103119 | Serine protease Do. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.566 |
SFL45739.1 | atpD | SAMN04488054_10121 | SAMN04488054_1079 | Serine protease Do. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.540 |
SFL45739.1 | glpK | SAMN04488054_10121 | SAMN04488054_101111 | Serine protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.752 |
SFL45739.1 | secD | SAMN04488054_10121 | SAMN04488054_10396 | Serine protease Do. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.748 |
SFL45739.1 | secF | SAMN04488054_10121 | SAMN04488054_10397 | Serine protease Do. | Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.748 |
SFL45739.1 | secY | SAMN04488054_10121 | SAMN04488054_12436 | Serine protease Do. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.547 |
SFL45754.1 | SFL45739.1 | SAMN04488054_10122 | SAMN04488054_10121 | Aldo/keto reductase. | Serine protease Do. | 0.551 |
SFL45754.1 | glpK | SAMN04488054_10122 | SAMN04488054_101111 | Aldo/keto reductase. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.489 |
SFL49328.1 | SFL45739.1 | SAMN04488054_101220 | SAMN04488054_10121 | Acyl-CoA dehydrogenase. | Serine protease Do. | 0.572 |
SFL49328.1 | SFL56475.1 | SAMN04488054_101220 | SAMN04488054_102171 | Acyl-CoA dehydrogenase. | N-terminal half of MaoC dehydratase. | 0.733 |
SFL49328.1 | SFL72989.1 | SAMN04488054_101220 | SAMN04488054_10476 | Acyl-CoA dehydrogenase. | Trypsin-like peptidase domain-containing protein. | 0.621 |
SFL56475.1 | SFL45739.1 | SAMN04488054_102171 | SAMN04488054_10121 | N-terminal half of MaoC dehydratase. | Serine protease Do. | 0.512 |
SFL56475.1 | SFL49328.1 | SAMN04488054_102171 | SAMN04488054_101220 | N-terminal half of MaoC dehydratase. | Acyl-CoA dehydrogenase. | 0.733 |
SFL56475.1 | SFL72989.1 | SAMN04488054_102171 | SAMN04488054_10476 | N-terminal half of MaoC dehydratase. | Trypsin-like peptidase domain-containing protein. | 0.512 |
SFL72989.1 | SFL45739.1 | SAMN04488054_10476 | SAMN04488054_10121 | Trypsin-like peptidase domain-containing protein. | Serine protease Do. | 0.750 |
SFL72989.1 | SFL49328.1 | SAMN04488054_10476 | SAMN04488054_101220 | Trypsin-like peptidase domain-containing protein. | Acyl-CoA dehydrogenase. | 0.621 |
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