STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL79121.1Predicted neuraminidase (sialidase). (361 aa)    
Predicted Functional Partners:
SFL79155.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.726
SFL79098.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.715
SFL79044.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.674
SFL79139.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.623
SFL79081.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.617
SFM25508.1
Arylsulfatase A.
 
  
  0.601
SFL79172.1
Alcohol dehydrogenase, class IV.
       0.524
SFM32969.1
Hypothetical protein.
    
  0.511
SFL79065.1
TRAP transporter, DctM subunit.
       0.498
dapA-4
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.485
Your Current Organism:
Salibacterium qingdaonense
NCBI taxonomy Id: 266892
Other names: Bacillus qingdaonensis, Bacillus qingdaonensis Wang et al. 2007, Bacillus sp. CM1, CGMCC 1.6134, JCM 14087, S. qingdaonense, Salibacterium qingdaonense (Wang et al. 2007) Reddy et al. 2015, strain CM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.