Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL58590.1 | SFL58616.1 | SAMN04488054_102268 | SAMN04488054_102269 | Penicillin-binding protein 2B. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.869 |
SFL58590.1 | SFL67237.1 | SAMN04488054_102268 | SAMN04488054_103226 | Penicillin-binding protein 2B. | Cell division protein FtsI/penicillin-binding protein 2. | 0.765 |
SFL58590.1 | SFL71701.1 | SAMN04488054_102268 | SAMN04488054_10417 | Penicillin-binding protein 2B. | Penicillin-binding protein 1A. | 0.648 |
SFL58590.1 | SFM06386.1 | SAMN04488054_102268 | SAMN04488054_11343 | Penicillin-binding protein 2B. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.793 |
SFL58590.1 | SFM06908.1 | SAMN04488054_102268 | SAMN04488054_11369 | Penicillin-binding protein 2B. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.941 |
SFL58590.1 | divIB | SAMN04488054_102268 | SAMN04488054_102276 | Penicillin-binding protein 2B. | Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.944 |
SFL58590.1 | mraY | SAMN04488054_102268 | SAMN04488054_102271 | Penicillin-binding protein 2B. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.858 |
SFL58590.1 | murC | SAMN04488054_102268 | SAMN04488054_11413 | Penicillin-binding protein 2B. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.814 |
SFL58590.1 | murD | SAMN04488054_102268 | SAMN04488054_102272 | Penicillin-binding protein 2B. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.888 |
SFL58616.1 | SFL58590.1 | SAMN04488054_102269 | SAMN04488054_102268 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Penicillin-binding protein 2B. | 0.869 |
SFL58616.1 | SFL67237.1 | SAMN04488054_102269 | SAMN04488054_103226 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Cell division protein FtsI/penicillin-binding protein 2. | 0.694 |
SFL58616.1 | SFL71701.1 | SAMN04488054_102269 | SAMN04488054_10417 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Penicillin-binding protein 1A. | 0.691 |
SFL58616.1 | SFM06386.1 | SAMN04488054_102269 | SAMN04488054_11343 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.615 |
SFL58616.1 | SFM06908.1 | SAMN04488054_102269 | SAMN04488054_11369 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.882 |
SFL58616.1 | divIB | SAMN04488054_102269 | SAMN04488054_102276 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.925 |
SFL58616.1 | mraY | SAMN04488054_102269 | SAMN04488054_102271 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.890 |
SFL58616.1 | murC | SAMN04488054_102269 | SAMN04488054_11413 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.551 |
SFL58616.1 | murD | SAMN04488054_102269 | SAMN04488054_102272 | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.866 |
SFL67237.1 | SFL58590.1 | SAMN04488054_103226 | SAMN04488054_102268 | Cell division protein FtsI/penicillin-binding protein 2. | Penicillin-binding protein 2B. | 0.765 |
SFL67237.1 | SFL58616.1 | SAMN04488054_103226 | SAMN04488054_102269 | Cell division protein FtsI/penicillin-binding protein 2. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.694 |
page 1 of 5