STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM07913.1Gas vesicle protein. (144 aa)    
Predicted Functional Partners:
SFM07928.1
Uncharacterized protein YoxC, contains an MCP-like domain.
 
    0.972
SFL52987.1
Uncharacterized protein YoxC, contains an MCP-like domain.
 
    0.863
SFM40054.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.746
SFL80422.1
Pyridoxamine 5'-phosphate oxidase like.
  
    0.732
SFL80438.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.724
sigA
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
    0.639
SFL54179.1
Acetyltransferase (GNAT) domain-containing protein.
  
    0.627
SFL63750.1
Putative zincin peptidase.
 
     0.606
SFM02940.1
Uncharacterized membrane protein YgaE, UPF0421/DUF939 family.
  
     0.580
SFL65121.1
Protein of unknown function.
  
     0.558
Your Current Organism:
Salibacterium qingdaonense
NCBI taxonomy Id: 266892
Other names: Bacillus qingdaonensis, Bacillus qingdaonensis Wang et al. 2007, Bacillus sp. CM1, CGMCC 1.6134, JCM 14087, S. qingdaonense, Salibacterium qingdaonense (Wang et al. 2007) Reddy et al. 2015, strain CM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.