SFM28531.1 protein (Salibacterium qingdaonense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFM28531.1

S-layer homology domain-containing protein. (738 aa)

Predicted Functional Partners:

SFL78242.1

0.763

SFL77856.1

0.739

SFM01662.1

0.736

SFL81019.1

0.734

SFL49413.1

0.720

SFL94806.1

0.710

SFM18286.1

0.708

SFM20296.1

0.708

SFL89363.1

0.707

SFM01998.1

0.674

Your Current Organism:

Salibacterium qingdaonense

NCBI taxonomy Id: 266892
Other names: Bacillus qingdaonensis, Bacillus qingdaonensis Wang et al. 2007, Bacillus sp. CM1, CGMCC 1.6134, JCM 14087, S. qingdaonense, Salibacterium qingdaonense (Wang et al. 2007) Reddy et al. 2015, strain CM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFL49413.1	SFL78242.1	SAMN04488054_101225	SAMN04488054_10519	YndJ-like protein.	S-layer homology domain-containing protein.	0.498
SFL49413.1	SFL81019.1	SAMN04488054_101225	SAMN04488054_105165	YndJ-like protein.	Hypothetical protein.	0.608
SFL49413.1	SFL89363.1	SAMN04488054_101225	SAMN04488054_107122	YndJ-like protein.	Hypothetical protein.	0.623
SFL49413.1	SFL94806.1	SAMN04488054_101225	SAMN04488054_10910	YndJ-like protein.	Lysophospholipase L1.	0.583
SFL49413.1	SFM01662.1	SAMN04488054_101225	SAMN04488054_11166	YndJ-like protein.	D-glucuronyl C5-epimerase C-terminus.	0.580
SFL49413.1	SFM01998.1	SAMN04488054_101225	SAMN04488054_11185	YndJ-like protein.	Looped-hinge helix DNA binding domain-containing protein, AbrB family.	0.494
SFL49413.1	SFM28531.1	SAMN04488054_101225	SAMN04488054_12821	YndJ-like protein.	S-layer homology domain-containing protein.	0.720
SFL77856.1	SFL81019.1	SAMN04488054_1051	SAMN04488054_105165	S-layer homology domain-containing protein.	Hypothetical protein.	0.674
SFL77856.1	SFL89363.1	SAMN04488054_1051	SAMN04488054_107122	S-layer homology domain-containing protein.	Hypothetical protein.	0.605
SFL77856.1	SFL94806.1	SAMN04488054_1051	SAMN04488054_10910	S-layer homology domain-containing protein.	Lysophospholipase L1.	0.586
SFL77856.1	SFM01662.1	SAMN04488054_1051	SAMN04488054_11166	S-layer homology domain-containing protein.	D-glucuronyl C5-epimerase C-terminus.	0.585
SFL77856.1	SFM01998.1	SAMN04488054_1051	SAMN04488054_11185	S-layer homology domain-containing protein.	Looped-hinge helix DNA binding domain-containing protein, AbrB family.	0.644
SFL77856.1	SFM28531.1	SAMN04488054_1051	SAMN04488054_12821	S-layer homology domain-containing protein.	S-layer homology domain-containing protein.	0.739
SFL78242.1	SFL49413.1	SAMN04488054_10519	SAMN04488054_101225	S-layer homology domain-containing protein.	YndJ-like protein.	0.498
SFL78242.1	SFL81019.1	SAMN04488054_10519	SAMN04488054_105165	S-layer homology domain-containing protein.	Hypothetical protein.	0.712
SFL78242.1	SFL89363.1	SAMN04488054_10519	SAMN04488054_107122	S-layer homology domain-containing protein.	Hypothetical protein.	0.660
SFL78242.1	SFL94806.1	SAMN04488054_10519	SAMN04488054_10910	S-layer homology domain-containing protein.	Lysophospholipase L1.	0.655
SFL78242.1	SFM01662.1	SAMN04488054_10519	SAMN04488054_11166	S-layer homology domain-containing protein.	D-glucuronyl C5-epimerase C-terminus.	0.660
SFL78242.1	SFM01998.1	SAMN04488054_10519	SAMN04488054_11185	S-layer homology domain-containing protein.	Looped-hinge helix DNA binding domain-containing protein, AbrB family.	0.569
SFL78242.1	SFM18286.1	SAMN04488054_10519	SAMN04488054_12015	S-layer homology domain-containing protein.	Protein of unknown function.	0.427

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About