STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0048PFAM: Excalibur domain protein; KEGG: rha:RHA1_ro05216 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Krad_0047
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: rha:RHA1_ro03506 possible excisionase.
       0.773
Krad_0046
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na? antiporter MnhB subunit-related protein; KEGG: aau:AAur_3681 putative NADH ubiquinone oxidoreductase/multisubunit Na+/H+ antiporter, MnhA/B subunit.
       0.561
Krad_0041
TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na? antiporter subunit; KEGG: sco:SCO6959 putative membrane protein.
       0.546
Krad_0042
PFAM: multiple resistance and pH regulation protein F; KEGG: art:Arth_3869 hypothetical protein.
       0.546
Krad_0043
KEGG: msm:MSMEG_0845 multisubunit Na+/H+ antiporter.
       0.546
Krad_0044
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: art:Arth_3871 NADH dehydrogenase (quinone).
       0.546
Krad_0045
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tfu:Tfu_0349 similar to multisubunit Na+/H+ antiporter MnhC subunit.
       0.546
Krad_3338
KEGG: ace:Acel_0882 hypothetical protein.
  
     0.473
Krad_1696
PFAM: WD40 domain protein beta Propeller; KEGG: sfu:Sfum_0755 TolB, N-terminal domain protein.
  
 
 0.424
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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