STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0091PFAM: Lycopene beta and epsilon cyclase; KEGG: sco:SCO0191 lycopene cyclase. (382 aa)    
Predicted Functional Partners:
Krad_3228
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fal:FRAAL2160 phytoene dehydrogenase (phytoene desaturase).
 
 
 0.993
Krad_3229
PFAM: Squalene/phytoene synthase; KEGG: fra:Francci3_1383 squalene/phytoene synthase.
 
  
 0.834
Krad_3227
PFAM: Polyprenyl synthetase; KEGG: art:Arth_1557 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.799
Krad_3225
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fal:FRAAL2168 putative phytoene dehydrogenase.
 
  
 0.781
Krad_0657
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: art:Arth_2742 electron transfer flavoprotein beta-subunit.
  
 
 0.712
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.565
Krad_0658
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: art:Arth_2741 electron transfer flavoprotein, alpha subunit.
  
 
 0.543
Krad_3503
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sco:SCO6026 fatty acid oxidation complex alpha-subunit.
  
  
 0.478
Krad_1097
KEGG: ace:Acel_1892 magnesium chelatase, ChlI subunit.
  
  
 0.463
Krad_1795
PFAM: rhodopsin; KEGG: gvi:gll0198 similar to bacterioopsin.
 
   
 0.431
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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