STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0105KEGG: bca:BCE_2783 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Krad_0104
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_4050 serine phosphatase.
       0.668
Krad_0103
Hypothetical protein; KEGG: bld:BLi03808 N-acetylmuramoyl-L-alanine amidase (major autolysin); RBL00297.
       0.633
Krad_0107
2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; KEGG: art:Arth_1525 2-methylcitrate dehydratase.
  
    0.600
Krad_0106
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_1663 transcriptional regulator, GntR family.
       0.594
Krad_0108
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
       0.590
Krad_0109
TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; KEGG: aau:AAur_1660 citrate synthase; Belongs to the citrate synthase family.
       0.590
Krad_3940
PFAM: intradiol ring-cleavage dioxygenase; KEGG: fra:Francci3_0108 twin-arginine translocation pathway signal.
 
     0.578
Krad_0115
PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100259 putative substrate-binding component of ABC transporter.
 
     0.443
Krad_0117
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00037 probable sugar ABC transporter, substrate-binding protein.
 
     0.438
Krad_0110
PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II.
       0.430
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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