STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0110PFAM: L-asparaginase II; KEGG: sma:SAV4025 L-asparaginase II. (324 aa)    
Predicted Functional Partners:
cutC
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.828
Krad_0112
PFAM: ROK family protein; KEGG: sco:SCO4285 sugar kinase.
       0.779
Krad_0884
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: art:Arth_3008 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
      0.688
Krad_2352
PFAM: MOSC domain containing protein; KEGG: sma:SAV4995 hypothetical protein.
      0.684
Krad_0113
PFAM: NUDIX hydrolase; KEGG: sco:SCO1203 MutT-like protein.
       0.642
Krad_0114
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV7422 putative LacI-family transcriptional regulator.
       0.567
Krad_0108
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
       0.545
Krad_0109
TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; KEGG: aau:AAur_1660 citrate synthase; Belongs to the citrate synthase family.
       0.545
Krad_0106
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_1663 transcriptional regulator, GntR family.
       0.541
Krad_0107
2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; KEGG: art:Arth_1525 2-methylcitrate dehydratase.
       0.541
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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