STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0119PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: nfa:nfa34020 putative glycosyl hydrolase. (757 aa)    
Predicted Functional Partners:
Krad_0115
PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL100259 putative substrate-binding component of ABC transporter.
 
     0.827
Krad_0117
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00037 probable sugar ABC transporter, substrate-binding protein.
 
     0.804
Krad_0116
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL100258 putative permease component of ABC transporter.
 
     0.783
Krad_0118
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: afm:Afu6g14610 alfa-L-rhamnosidase, putative.
 
    
0.725
Krad_2527
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_4901 glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
 
 0.689
Krad_0114
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV7422 putative LacI-family transcriptional regulator.
       0.625
Krad_1386
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_0590 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.601
Krad_0120
Hypothetical protein.
       0.594
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.580
Krad_0113
PFAM: NUDIX hydrolase; KEGG: sco:SCO1203 MutT-like protein.
       0.552
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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