STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0131PFAM: SCP-like extracellular; KEGG: ace:Acel_1209 allergen V5/TPX-1 family protein. (206 aa)    
Predicted Functional Partners:
Krad_2955
PFAM: inner-membrane translocator; KEGG: nfa:nfa18730 putative branched-chain amino acid transporter component; Belongs to the binding-protein-dependent transport system permease family.
   
   0.541
Krad_0132
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: nca:Noca_0967 PspC domain protein.
       0.489
Krad_0130
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdi:DIP0589 hypothetical protein.
       0.485
Krad_2880
KEGG: rru:Rru_A3092 parallel beta-helix repeat.
  
    0.472
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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