STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0139PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_4582 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (233 aa)    
Predicted Functional Partners:
Krad_0140
PFAM: regulatory protein MerR; KEGG: sco:SCO7585 MerR-family transcriptional regulator.
 
     0.660
Krad_0138
PFAM: Alkaline phosphatase; KEGG: gvi:gll0490 phosphodiesterase/alkaline phosphatase D.
       0.584
Krad_0141
Hypothetical protein.
       0.554
Krad_0797
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_0330 short-chain dehydrogenase/reductase SDR.
 
     0.547
Krad_2692
KEGG: sco:SCO7631 secreted protein.
  
     0.522
Krad_2506
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gvi:gll4203 probable dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.485
Krad_3641
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2548 3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
   0.458
Krad_2481
KEGG: nca:Noca_1789 secreted protein.
  
     0.427
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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